FigTree

Anvi'o — integrated analysis and visualization platform for 'omics data. Supports metagenomics (MAG binning, refinement, read recruitment), pangenomics (gene cluster analysis, ANI computation), phylog

1 shared topic • 2 shared operations

ggtree — R/Bioconductor package for phylogenetic tree visualization and annotation using ggplot2 grammar. Supports Newick, Nexus, NHX, Jplace, and BEAST tree formats. Enables layer-based annotation wi

1 shared topic • 2 shared operations

Deep learning system for protein structure prediction from amino acid sequence with atomic accuracy — revolutionized structural biology.

1 shared topic • 1 shared operation

Microreact — web-based visualization platform for genomic epidemiology that combines interactive phylogenetic trees, geographic maps, and timelines with metadata tables synchronized through client-sid

1 shared topic • 1 shared operation

scipy.optimize — Unified interface for numerical optimization in Python. Provides local and global minimization (minimize, differential_evolution, dual_annealing), root finding (root, root_scalar), cu

1 shared topic • 1 shared operation