Entrez Direct

CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written

1 shared topic • 2 shared operations

DIA-NN R package — R toolkit for post-processing DIA-NN proteomics search results. Provides report loading (diann_load), precursor/peptide/protein matrix generation with FDR filtering (diann_matrix),

1 shared topic • 2 shared operations

Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,

1 shared topic • 2 shared operations

Philosopher — fast, scalable Go toolkit for shotgun proteomics data analysis. Provides database downloading, peptide validation (PeptideProphet), protein inference (ProteinProphet), PTM localization (

1 shared topic • 2 shared operations

SnpEff — fast Java-based variant annotation and effect prediction tool that annotates genomic variants (SNPs, indels, MNPs) with gene impact, protein changes, loss-of-function predictions, and HGVS no

1 shared topic • 2 shared operations