Loading homepage
Use when working with Ensembl VEP (Variant Effect Predictor) to annotate SNPs, indels, and structural variation with gene, transcript, and protein-level consequences. Supports VCF, HGVS, and coordinat
Use with AI
Install the MCP server or CLI to instantly fetch Ensembl VEP documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ensembl-vep
Ensembl Compara — comparative genomics database and API from EMBL-EBI providing pairwise and multiple whole-genome alignments, gene trees, protein families, orthologues, paralogues, and synteny region
1 shared topic • 3 shared operations
Ensembl REST API — HTTP/JSON web service for programmatic access to Ensembl genomic data without installing local databases. Supports gene/transcript/protein lookup by stable ID or gene symbol, sequen
1 shared topic • 3 shared operations
Use when querying, downloading, or analysing QTL data from the QTLbase database — a comprehensive multi-tissue, multi-omics QTL repository covering eQTL, sQTL, and pQTL studies across human and model
1 shared topic • 3 shared operations
Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem
1 shared topic • 2 shared operations
Direct REST API access to UniProt (250M+ protein sequences, 570K+ reviewed Swiss-Prot entries). Protein search, FASTA/JSON retrieval, ID mapping across 200+ databases, batch retrieval, streaming, fiel
1 shared topic • 2 shared operations