Ensembl REST API

Ensembl Compara — comparative genomics database and API from EMBL-EBI providing pairwise and multiple whole-genome alignments, gene trees, protein families, orthologues, paralogues, and synteny region

2 shared topics • 3 shared operations

ANNOVAR — efficient Perl-based tool for functional annotation of genetic variants from diverse genomes. Supports gene-based, region-based, and filter-based annotation using 100+ databases including Cl

2 shared topics • 2 shared operations

BEAST2 — Bayesian Evolutionary Analysis by Sampling Trees. Cross-platform Java application for Bayesian phylogenetic inference using MCMC sampling. Use when estimating time-calibrated phylogenies, rel

2 shared topics • 2 shared operations

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

2 shared topics • 2 shared operations

OrthoFinder — fast, accurate ortholog inference for comparative genomics. Identifies orthogroups, orthologs, gene trees, rooted species trees, and gene duplication events from protein or nucleotide se

2 shared topics • 2 shared operations