Loading homepage
ENIGMA Toolbox — Python/MATLAB framework for cross-disorder neuroimaging and genomics analysis using ENIGMA consortium summary statistics. Loads precomputed subcortical and cortical disorder effect si
Use with AI
Install the MCP server or CLI to instantly fetch ENIGMA Toolbox documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/enigma-toolbox
MAGeCK-VISPR — comprehensive CRISPR screen analysis framework combining MAGeCK statistical testing (RRA and MLE algorithms) with VISPR interactive visualization. Supports sgRNA count generation from F
3 shared topics • 1 shared operation
IMPUTE5 for genotype imputation from phased haplotypes and a reference panel. Performs fast, accurate imputation using the Li and Stephens hidden Markov model with the PBWT data structure for efficien
2 shared topics • 2 shared operations
LIMIX — Python library for linear mixed models (LMM) and interaction QTL (iQTL) mapping. Use for eQTL discovery, cis-QTL and trans-QTL scans, GxE interaction testing, conditional QTL analysis, and GWA
2 shared topics • 2 shared operations
Tools for processing, parsing, and querying SNOMED CT RF2 release files and terminologies. Use for clinical coding, ontology mapping, RF2 extraction, and Snowstorm API interactions.
2 shared topics • 2 shared operations
scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle
2 shared topics • 1 shared operation