diffcyt

AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for

2 shared topics

fdrtool — estimation of tail area-based false discovery rates (Fdr/q-values) and density-based local false discovery rates (fdr) from observed test statistics. Supports four null models: normal (z-sco

2 shared topics

qvalue — Q-value estimation for false discovery rate control in multiple hypothesis testing. Estimates q-values, the proportion of true null hypotheses (pi0), and local false discovery rates from vect

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rMATS (Replicate Multivariate Analysis of Transcript Splicing) — statistical tool for detecting differential alternative splicing from RNA-seq data. Identifies five splicing event types: skipped exon

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Use this skill for statistical simulation of single-cell and spatial omics data with scDesign3. Route here when users ask about generating synthetic scRNA-seq data, benchmarking analysis tools with re

2 shared topics