Datashader

ScreenProcessing — Python pipeline for analyzing pooled genetic screens (CRISPRi/CRISPRa). Converts raw FASTQ sequencing files into library counts using fastqgz_to_counts.py, then generates sgRNA phen

1 shared topic • 2 shared operations

scRepertoire -- R package for analyzing T cell receptor (TCR) and B cell receptor (BCR) repertoires from single-cell sequencing data. Integrates with Seurat and SingleCellExperiment objects to combine

1 shared topic • 2 shared operations

Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol

1 shared topic • 1 shared operation

scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle

1 shared topic • 1 shared operation

TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti

1 shared topic • 1 shared operation