Cutadapt

Sickle — sliding-window quality trimming tool for short-read Illumina FASTQ data. Trims low-quality bases from 3' and 5' ends using a windowed adaptive algorithm. Supports paired-end (pe) and single-e

1 shared topic • 3 shared operations

Trimmomatic — flexible, multithreaded read trimming tool for Illumina sequence data. Performs adapter removal (palindrome and simple modes), quality trimming (sliding window, leading/trailing), hard c

1 shared topic • 3 shared operations

fastools — A Python-based toolkit by Jeroen F.J. Laros for the manipulation and characterization of FASTA and FASTQ files. Use when performing sequence conversions, filtering by length, generating seq

1 shared topic • 2 shared operations

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

1 shared topic • 2 shared operations

PRINSEQ++ — high-performance C++ tool for quality control and preprocessing of FASTQ sequencing reads. Filters and trims reads by quality score, length, GC content, sequence complexity (DUST/entropy),

1 shared topic • 2 shared operations