CRAM Tools

BBMap/BBTools — suite of 265+ fast, multithreaded Java-based bioinformatics tools for DNA/RNA sequence analysis. Includes BBMap short read aligner, BBDuk adapter trimmer and quality filter, BBMerge pa

1 shared topic • 1 shared operation

g:Profiler — multi-organism functional enrichment analysis and gene identifier mapping toolkit. Performs over-representation analysis (ORA) against Gene Ontology (GO:BP, GO:MF, GO:CC), KEGG, Reactome,

1 shared topic • 1 shared operation

Use when working with intervaltree — intervaltree — Python mutable interval

1 shared topic • 1 shared operation

ProDy — Python library for protein dynamics analysis and structural bioinformatics. Provides elastic network models (GNM, ANM), principal component analysis (PCA) of structural ensembles and MD trajec

1 shared topic • 1 shared operation

Pychopper — Nanopore direct cDNA read preprocessing tool that identifies, orients, and trims full-length reads using primer detection (pHMM or alignment). Rescues fused reads by dynamic programming, e

1 shared topic • 1 shared operation