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Use when working with CARNIVAL (CAusal Reasoning for Network Identification using Integer VALue programming), an R package for inferring causal signaling network topologies from transcriptomic data. C
Use with AI
Install the MCP server or CLI to instantly fetch CARNIVAL documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/carnival
BioGRID — curated repository of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from the published literature. Provides REST API (v4+) f
2 shared topics • 1 shared operation
Use when visualizing, analyzing, or manipulating biological networks with Cytoscape, the industry-standard desktop platform for systems biology and pathway analysis. Covers network import (SIF, XGMML,
2 shared topics • 1 shared operation
Use when working with NetworkX, graph analysis in Python, biological network analysis, protein-protein interaction networks, gene regulatory networks, metabolic networks, pathway analysis, network top
2 shared topics • 1 shared operation
OmniPath and OmnipathR — systems biology prior knowledge database and R client for accessing protein-protein interactions, gene regulatory networks, enzyme-substrate (PTM) relationships, protein compl
2 shared topics • 1 shared operation
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
2 shared topics