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BioContainers — community-driven registry of Docker and Singularity container images for bioinformatics tools. Provides reproducible, pre-built containers from Bioconda recipes via automated multi-bui
Use with AI
Install the MCP server or CLI to instantly fetch BioContainers documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/biocontainers
docker pull biocontainers/biocontainers:0.0.4CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written
1 shared topic • 3 shared operations
Latch SDK — Python-native bioinformatics workflow platform for registering, executing, and sharing reproducible workflows on cloud infrastructure. Define workflows with @workflow and @task decorators,
1 shared topic • 3 shared operations
Dash Bio -- interactive bioinformatics visualization components built on Plotly Dash. Provides domain-specific charts including Circos plots, ideograms, needle plots (lollipop/mutation diagrams), alig
2 shared topics • 1 shared operation
Use when working with OmicsIntegrator or OmicsIntegrator2 — a network-based multi-omics data integration framework from the Fraenkel Lab (MIT). Applies the Prize-Collecting Steiner Forest (PCSF) algor
2 shared topics • 1 shared operation
pyOpenMS — Python bindings for OpenMS mass spectrometry framework. Read/write mzML, mzXML, mzTab, TraML, and FASTA files. Signal processing, peak picking, feature detection, peptide identification, pr
2 shared topics • 1 shared operation