Bioconda

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

1 shared topic • 3 shared operations

CWLtool — reference implementation of the Common Workflow Language (CWL) for portable, reproducible bioinformatics workflows. Executes CommandLineTool, Workflow, and ExpressionTool descriptors written

1 shared topic • 3 shared operations

Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo

1 shared topic • 3 shared operations

Dockstore — open platform for sharing Docker-based bioinformatics tools and workflows written in CWL, WDL, Nextflow, and Galaxy. Provides workflow discovery, versioned registrations, TRS API for progr

1 shared topic • 3 shared operations

Papermill — parameterize, execute, and analyze Jupyter notebooks from the command line or Python API. Enables reproducible notebook-based bioinformatics pipelines by injecting parameters into tagged c

1 shared topic • 3 shared operations