Bandage-NG

AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for

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Use this skill for compleasm genome assembly completeness assessment. Route here when users ask about BUSCO-based assembly evaluation, miniprot-based completeness scoring, lineage dataset selection fo

2 shared topics • 2 shared operations

Use when working with gfatools — a lightweight C toolkit for GFA format manipulation — for viewing, converting, sorting, and validating Graphical Fragment Assembly (GFA) files. Provides subcommands fo

2 shared topics • 2 shared operations

Merqury — reference-free quality, completeness, and phasing assessment for genome assemblies using k-mer databases built from Illumina reads. Computes QV (Phred-scaled quality value), k-mer completene

2 shared topics • 2 shared operations

Use when working with ribosome profiling (Ribo-seq) data to identify actively translated open reading frames (ORFs) using RiboCode — a Python tool for de novo ORF annotation from ribosome footprinting

2 shared topics • 2 shared operations