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Use when working with ribosome profiling (Ribo-seq) data to identify actively translated open reading frames (ORFs) using RiboCode — a Python tool for de novo ORF annotation from ribosome footprinting
Use with AI
Install the MCP server or CLI to instantly fetch RiboCode documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ribocode
AGAT (Another Gff Analysis Toolkit) — comprehensive Perl toolkit for reading, writing, validating, fixing, and manipulating genome annotation files in GFF3, GTF, and GFF2 formats. Converts between for
2 shared topics • 2 shared operations
Use when working with Bandage-NG (BandageNG), the modernized genome assembly graph visualization tool. Covers loading GFA, FASTG, and Trinity assembly graphs, rendering graph images from the command l
2 shared topics • 2 shared operations
EIGENSOFT / smartpca — suite for population structure analysis and stratification correction in genome-wide genetic studies. smartpca performs principal component analysis (PCA) on genotype data to in
2 shared topics • 1 shared operation
IsoformSwitchAnalyzeR — R/Bioconductor package for detecting, annotating, and visualizing isoform switches with functional consequences from RNA-seq data. Integrates with Salmon, kallisto, StringTie,
2 shared topics • 1 shared operation
scikit-allel — Python package for exploratory analysis of large-scale genetic variation data. Provides data structures for genotypes, haplotypes, and allele counts (GenotypeArray, HaplotypeArray, Alle
2 shared topics • 1 shared operation