compleasm

Use when working with Bandage-NG (BandageNG), the modernized genome assembly graph visualization tool. Covers loading GFA, FASTG, and Trinity assembly graphs, rendering graph images from the command l

2 shared topics • 2 shared operations

Use when working with gfatools — a lightweight C toolkit for GFA format manipulation — for viewing, converting, sorting, and validating Graphical Fragment Assembly (GFA) files. Provides subcommands fo

2 shared topics • 2 shared operations

Merqury — reference-free quality, completeness, and phasing assessment for genome assemblies using k-mer databases built from Illumina reads. Computes QV (Phred-scaled quality value), k-mer completene

2 shared topics • 2 shared operations

NanoPlot — visualization and quality-control tool for Oxford Nanopore long-read sequencing data. Generates read length histograms, quality distribution plots, cumulative yield curves, and alignment id

1 shared topic • 3 shared operations

Purge Haplotigs — pipeline for curating heterozygous diploid genome assemblies by identifying and reassigning haplotigs (alternative haplotype contigs). Analyzes read-depth histograms to set coverage

1 shared topic • 3 shared operations