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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1 | VEP (Ensembl Variant Effect Predictor) | Genomics | Genomics | 68.98 | +17% |
| 8 | MultiQC | QC & Preprocessing | QC & Preprocessing | 65.2 | +17% |
Data as of: Apr 12, 2026
| 10 | HMMER | Genomics | Genomics | 64.48 | +17% |
| 12 | BEDTools | Genomics | Genomics | 64.12 | +17% |
| 13 | HISAT2 | Genomics | Genomics | 63.88 | +17% |
| 14 | Kallisto | Transcriptomics | Transcriptomics | 63.88 | +17% |
| 23 | Cvxpy | Statistics | Statistics | 61.84 | +17% |
| 25 | Seurat | Single-Cell | Single-Cell | 59.08 | +17% |
| 2 | SAMtools | Genomics | Genomics | 68.86 | +15% |
| 3 | DESeq2 | Transcriptomics | Transcriptomics | 68.08 | +15% |