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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1354 | MultiXcan | Population Genetics | Population Genetics | 26.7 | +3% |
| 1353 | MultiVI | Systems Biology | Systems Biology | 26.7 | +3% |
Data as of: Apr 12, 2026
| 8 |
| MultiQC |
| QC & Preprocessing |
| QC & Preprocessing |
| 65.2 |
| +17% |
| 669 | MuData | Single-Cell | Single-Cell | 35.74 | +8% |
| 1827 | mTAGs | Metagenomics | Metagenomics | 22.68 | +3% |
| 546 | MSstats | Proteomics | Proteomics | 35.8 | +8% |
| 1352 | msprime | QC & Preprocessing | QC & Preprocessing | 26.7 | +3% |
| 1351 | MSnbase | Systems Biology | Systems Biology | 26.7 | +3% |
| 942 | MSIsensor2 | Clinical Genomics | Clinical Genomics | 29.34 | +3% |
| 1350 | msigdbr | Transcriptomics | Transcriptomics | 26.7 | +3% |