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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1367 | nf-core/hic | Genomics | Genomics | 26.7 | +3% |
| 944 | nf-core/eager | Workflows | Workflows | 29.34 | +3% |
Data as of: Apr 12, 2026
| 1366 |
| nf-core/differentialabundance |
| Workflows |
| Workflows |
| 26.7 |
| +3% |
| 1687 | nf-core/ampliseq | Workflows | Workflows | 24.3 | +3% |
| 747 | nf-core lint | Workflows | Workflows | 29.88 | +3% |
| 551 | nf-core | Workflows | Workflows | 35.8 | +8% |
| 129 | Nextstrain | Clinical Genomics | Clinical Genomics | 40.42 | +8% |
| 1910 | Nextflow Tower / Seqera | Workflows | Workflows | 21.84 | +3% |
| 7 | Nextflow | Workflows | Workflows | 65.68 | +15% |
| 163 | NextDenovo | Genomics | Genomics | 38.86 | +8% |