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Use when working with nf-core/ampliseq — a reproducible Nextflow pipeline for amplicon sequencing analysis targeting 16S rRNA, ITS, 18S rRNA, and other custom amplicon regions. Takes paired-end or sin
Use with AI
Install the MCP server or CLI to instantly fetch nf-core/ampliseq documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/nf-coreampliseq
CNVkit -- Python toolkit for detecting copy number variants (CNVs) from targeted DNA sequencing data (hybrid capture, amplicon) and whole-genome sequencing (WGS). Leverages both on-target and off-targ
2 shared topics • 1 shared operation
DADA2 — high-resolution amplicon sequence variant (ASV) inference from Illumina, 454, and Ion Torrent amplicon sequencing data. R/Bioconductor package that models sequencing errors to resolve exact bi
2 shared topics • 1 shared operation
NetCoMi (Network Construction and Comparison for Microbiome Data) — R package for constructing, analyzing, and comparing microbial association and dissimilarity networks from compositional count data.
2 shared topics • 1 shared operation
ShortBRED — metagenomics protein-family quantification tool from the bioBakery suite. Identifies short, representative peptide markers from protein families and quantifies their relative abundance in
2 shared topics • 1 shared operation
VarDict variant caller for SNVs, MNVs, indels, complex variants, and structural variants from BAM files. Supports somatic paired tumor-normal calling and single-sample germline mode. Ultra-sensitive v
2 shared topics • 1 shared operation