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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1635 | Ganon | Metagenomics | Metagenomics | 24.3 | +3% |
| 1636 | GAPIT | Population Genetics | Population Genetics | 24.3 | +3% |
Data as of: Apr 12, 2026
| 40 |
| GATK (Genome Analysis Toolkit) |
| Genomics |
| Genomics |
| 47.86 |
| +10% |
| 1820 | GATK ASEReadCounter | Transcriptomics | Transcriptomics | 22.68 | +3% |
| 140 | GATK HaplotypeCaller | Genomics | Genomics | 38.92 | +8% |
| 219 | GATK Methylation | Epigenomics | Epigenomics | 38.8 | +8% |
| 639 | GATK Mutect2 (low AF) | Population Genetics | Population Genetics | 35.74 | +8% |
| 220 | GATK VQSR | Genomics | Genomics | 38.8 | +8% |
| 1257 | gatk-cnv | Genomics | Genomics | 26.7 | +3% |
| 1258 | gatk-markduplicates | Utilities & Infrastructure | Utilities & Infrastructure | 26.7 | +3% |