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Use when working with ganon (ganon2) for metagenomic read classification, taxonomic binning/profiling, large-scale reference database builds, or incremental database updates from RefSeq/GenBank/GTDB.
Use with AI
Install the MCP server or CLI to instantly fetch Ganon documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/ganon
Use when working with nf-core/taxprofiler for shotgun metagenomics taxonomic classification and profiling across multiple tools and databases. Covers samplesheet/database sheet preparation, opt-in pro
1 shared topic • 2 shared operations
Use when working with abricate — ABRicate — mass screening of contigs
1 shared topic • 1 shared operation
SourceTracker2 is a Bayesian microbial source-tracking tool that estimates source contributions to sink communities using Gibbs sampling. Use this skill for SourceTracker/SourceTracker2 workflows, mic
1 shared topic • 1 shared operation
1 shared topic • 1 shared operation
VirSorter2 is a multi-classifier pipeline for identifying DNA and RNA viral sequences from metagenomic and genomic assemblies. It supports dsDNA phage, ssDNA, RNA, NCLDV, and lavidaviridae groups, out
1 shared topic • 1 shared operation