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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 980 | Franklin | Clinical Genomics | Clinical Genomics | 28.86 | +3% |
| 318 | FreeBayes -- Bayesian Haplotype-Based Variant Caller | Genomics | Genomics | 38.74 | +8% |
Data as of: Apr 12, 2026
| 749 | FreeSurfer | Systems Biology | Systems Biology | 29.76 | +3% |
| 319 | FSL MRS | Imaging | Imaging | 38.74 | +8% |
| 1046 | Full analysis chain | Utilities & Infrastructure | Utilities & Infrastructure | 27.06 | +3% |
| 1709 | Full phenopacket workflow | Genomics | Genomics | 24.3 | +3% |
| 638 | FUMA | Population Genetics | Population Genetics | 35.74 | +8% |
| 1253 | Funannotate | Genomics | Genomics | 26.7 | +3% |
| 2056 | Funcotator | Genomics | Genomics | 15.18 | 0% |
| 1254 | FUNGuild | Metagenomics | Metagenomics | 26.7 | +3% |