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Fiona is a geospatial data access library for Python, providing a simple, Pythonic API for reading and writing vector spatial data (e.g., Shapefile, GeoJSON, GPKG). Essential for spatial data ingestio
Use with AI
Install the MCP server or CLI to instantly fetch Full analysis chain documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/fiona
Tools and workflows for accessing, querying, and analyzing data from the 1000 Genomes Project (1KGP) — the largest public catalog of human genetic variation with whole-genome sequences from 3,202 indi
1 shared topic • 2 shared operations
ClinVar Database — NCBI's public archive of human genetic variant clinical significance. Query via E-utilities REST API (esearch, esummary, efetch, elink) or download bulk data from FTP in XML, VCF, a
1 shared topic • 2 shared operations
DECIPHER (DatabasE of Chromosomal Imbalance and Phenotype in Humans using Ensembl Resources) — Wellcome Sanger Institute web platform for interpreting pathogenic copy number variants (CNVs), chromosom
1 shared topic • 2 shared operations
GATK (Genome Analysis Toolkit) — the industry-standard framework for variant discovery in high-throughput sequencing data. Covers the gatk command-line wrapper, Java/JVM tuning, resource bundle manage
1 shared topic • 2 shared operations
Zarr — chunked, compressed N-dimensional arrays for Python with cloud-native storage. Provides hierarchical groups, pluggable compression codecs (Blosc, Zstd, Gzip), sharding for large-scale datasets,
1 shared topic • 2 shared operations