FreeSurfer

Noise2Void (N2V) is a self-supervised deep learning method for fluorescence microscopy image denoising that requires only noisy images — no clean ground truth needed. Uses a blind-spot convolutional n

2 shared topics • 1 shared operation

QuPath — open-source platform for whole slide image analysis and digital pathology. Provides interactive tools for tissue detection via thresholding, cell detection and positive cell classification (H

2 shared topics • 1 shared operation

Use when analyzing EEG or MEG electrophysiology data with Brainstorm. Covers preprocessing (filtering, artifact rejection, ICA), source reconstruction (MNE, beamformer, dipole fitting), time-frequency

2 shared topics

scimap — Python toolkit for multiplexed imaging spatial single-cell analysis (CODEX, CyCIF, IMC, MIBI, mIHC). Loads MCMICRO quantification CSV outputs into AnnData, performs marker-based hierarchical

2 shared topics

Spectre is an R toolkit for high-dimensional single-cell cytometry and imaging analysis, including data import (CSV/FCS), metadata integration, arcsinh/logicle transformation, clustering (FlowSOM, Phe

2 shared topics