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Use when analyzing EEG or MEG electrophysiology data with Brainstorm. Covers preprocessing (filtering, artifact rejection, ICA), source reconstruction (MNE, beamformer, dipole fitting), time-frequency
Use with AI
Install the MCP server or CLI to instantly fetch Brainstorm documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/brainstorm
FreeSurfer is a neuroimaging software suite for processing and analyzing human brain MRI data. Use for cortical surface reconstruction, brain parcellation, volumetric segmentation, cortical thickness
2 shared topics
Noise2Void (N2V) is a self-supervised deep learning method for fluorescence microscopy image denoising that requires only noisy images — no clean ground truth needed. Uses a blind-spot convolutional n
2 shared topics
QuPath — open-source platform for whole slide image analysis and digital pathology. Provides interactive tools for tissue detection via thresholding, cell detection and positive cell classification (H
2 shared topics
scimap — Python toolkit for multiplexed imaging spatial single-cell analysis (CODEX, CyCIF, IMC, MIBI, mIHC). Loads MCMICRO quantification CSV outputs into AnnData, performs marker-based hierarchical
2 shared topics
Spectre is an R toolkit for high-dimensional single-cell cytometry and imaging analysis, including data import (CSV/FCS), metadata integration, arcsinh/logicle transformation, clustering (FlowSOM, Phe
2 shared topics