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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 490 | bwa-meth | Epigenomics | Epigenomics | 35.8 | +8% |
| 491 | Cell Ranger ATAC | Genomics | Genomics | 35.8 | +8% |
Data as of: Apr 12, 2026
| 492 |
| chainTools (UCSC Kent Utilities) |
| Genomics |
| Genomics |
| 35.8 |
| +8% |
| 493 | CheckM | Metagenomics | Metagenomics | 35.8 | +8% |
| 494 | ClinVar Submission Tools | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |
| 495 | ClonalFrameML | Phylogenetics | Phylogenetics | 35.8 | +8% |
| 496 | ComplexHeatmap | Imaging | Imaging | 35.8 | +8% |
| 497 | cooltools | Genomics | Genomics | 35.8 | +8% |
| 498 | CRISPRcleanR | Systems Biology | Systems Biology | 35.8 | +8% |
| 499 | Cromwell / WDL | Utilities & Infrastructure | Utilities & Infrastructure | 35.8 | +8% |