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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 700 | SCENIC | Single-Cell | Single-Cell | 35.74 | +8% |
| 1742 | scDesign3 | QC & Preprocessing | QC & Preprocessing | 24.3 | +3% |
Data as of: Apr 12, 2026
| 1441 |
| scde |
| Single-Cell |
| Single-Cell |
| 26.7 |
| +3% |
| 465 | scDblFinder | Single-Cell | Single-Cell | 35.86 | +8% |
| 1440 | scDALI | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 1439 | scCustomize | Visualization | Visualization | 26.7 | +3% |
| 896 | scCRISPR | Systems Biology | Systems Biology | 29.4 | +3% |
| 577 | scCODA | Single-Cell | Single-Cell | 35.8 | +8% |
| 1438 | scBERT | Machine Learning | Machine Learning | 26.7 | +3% |
| 464 | scater | Transcriptomics | Transcriptomics | 35.86 | +8% |