Loading homepage
scDALI — differential allelic imbalance and allele-specific expression (ASE) analysis in single-cell RNA-seq data using Gaussian process models. Detects whether allelic imbalance changes along cell st
Use with AI
Install the MCP server or CLI to instantly fetch scDALI documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/scdali
FLAMES — Full-Length Analysis of Mutations and Splicing for bulk and single-cell long-read RNA-seq data. R/Bioconductor pipeline for barcode demultiplexing, isoform discovery, transcript quantificatio
2 shared topics • 3 shared operations
alevin-fry — fast, accurate, and memory-frugal Rust-based tool for single-cell and single-nucleus RNA-seq quantification. Processes RAD (Reduced Alignment Data) files from salmon alevin to generate ce
2 shared topics • 2 shared operations
DRAGEN (Dynamic Read Analysis for GENomics) — Illumina's FPGA-accelerated bioinformatics platform for secondary analysis of next-generation sequencing data. Performs hardware-accelerated mapping, alig
2 shared topics • 2 shared operations
salmon — Fast, bias-aware transcript quantification from RNA-seq data using selective alignment to the transcriptome. Supports bulk RNA-seq (mapping-based and alignment-based modes), single-cell RNA-s
2 shared topics • 2 shared operations
Salmon is an ultrafast, bias-correcting tool for quantifying transcript abundances from RNA-seq reads using quasi-mapping or selective alignment. Alevin is Salmon's single-cell mode for generating cel
2 shared topics • 2 shared operations