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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 331 | Mutect2 -- GATK Somatic Short Variant Caller | Genomics | Genomics | 38.74 | +8% |
| 332 | OptiType | Clinical Genomics | Clinical Genomics | 38.74 | +8% |
Data as of: Apr 12, 2026
| 333 | Pavian | Metagenomics | Metagenomics | 38.74 | +10% |
| 334 | Pfam | Utilities & Infrastructure | Utilities & Infrastructure | 38.74 | +8% |
| 335 | phantompeakqualtools | Epigenomics | Epigenomics | 38.74 | +8% |
| 336 | Pilon | Genomics | Genomics | 38.74 | +8% |
| 337 | Porechop | QC & Preprocessing | QC & Preprocessing | 38.74 | +8% |
| 338 | Sage | Proteomics | Proteomics | 38.74 | +8% |
| 339 | scib -- Single-Cell Integration Benchmarking | Single-Cell | Single-Cell | 38.74 | +8% |
| 340 | Stacks | Other | Other | 38.74 | +8% |