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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1957 | Spark / PySpark | Workflows | Workflows | 21.84 | +3% |
| 1832 | SPARK | Single-Cell | Single-Cell | 22.68 | +3% |
Data as of: Apr 12, 2026
| 1463 |
| SpaGCN |
| Imaging |
| Imaging |
| 26.7 |
| +3% |
| 97 | SPAdes | Metagenomics | Metagenomics | 42.88 | +8% |
| 1749 | SpadeR | Other | Other | 24.3 | +3% |
| 1421 | spacexr (RCTD) | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 1462 | Space Ranger | Single-Cell | Single-Cell | 26.7 | +3% |
| 1956 | sp (R) | Other | Other | 21.84 | +3% |
| 402 | sourmash | Metagenomics | Metagenomics | 36.4 | +8% |
| 32 | Sourcetracker2 | Other | Other | 49.72 | +8% |