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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 19 | MetaPhlAn | Metagenomics | Metagenomics | 62.68 | +15% |
| 20 | MUSCLE | Phylogenetics | Phylogenetics | 62.68 | +15% |
Data as of: Apr 12, 2026
| 21 |
| SBayesR / SBayesRC |
| Population Genetics |
| Population Genetics |
| 62.68 |
| +15% |
| 22 | StringTie | Transcriptomics | Transcriptomics | 62.68 | +15% |
| 24 | Filtlong | QC & Preprocessing | QC & Preprocessing | 60.76 | +15% |
| 26 | Rioxarray | Other | Other | 58.48 | +15% |
| 28 | Crux | Metagenomics | Metagenomics | 50.98 | +10% |
| 29 | PyDESeq2 | Transcriptomics | Transcriptomics | 50.86 | +10% |
| 36 | BCFtools | Genomics | Genomics | 48.34 | +10% |
| 40 | GATK (Genome Analysis Toolkit) | Genomics | Genomics | 47.86 | +10% |