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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 139 |
| BWA-MEM2 |
| Genomics |
| Genomics |
| 38.92 |
| +8% |
| 307 | BWA-MEM2 | Genomics | Genomics | 38.74 | +8% |
| 490 | bwa-meth | Epigenomics | Epigenomics | 35.8 | +8% |
| 1157 | Cactus | Genomics | Genomics | 26.7 | +3% |
| 608 | CADD -- Combined Annotation Dependent Depletion | Genomics | Genomics | 35.74 | +8% |
| 906 | Caduceus | Machine Learning | Machine Learning | 29.34 | +3% |
| 1858 | cairosvg | Visualization | Visualization | 21.84 | +3% |
| 1158 | CAMERA | Systems Biology | Systems Biology | 26.7 | +3% |