CADD -- Combined Annotation Dependent Depletion

ANNOVAR — efficient Perl-based tool for functional annotation of genetic variants from diverse genomes. Supports gene-based, region-based, and filter-based annotation using 100+ databases including Cl

2 shared topics • 2 shared operations

CPTAC pipelines — Python toolkit for accessing and analyzing Clinical Proteomic Tumor Analysis Consortium (CPTAC) multi-omics cancer data. Provides programmatic download of proteomics, phosphoproteomi

2 shared topics • 2 shared operations

readr — tidyverse R package for reading rectangular text data: CSV, TSV, fixed-width, whitespace-delimited, and log files. Provides fast parsing with automatic type inference, explicit col_types speci

2 shared topics • 2 shared operations

SnpEff — fast Java-based variant annotation and effect prediction tool that annotates genomic variants (SNPs, indels, MNPs) with gene impact, protein changes, loss-of-function predictions, and HGVS no

2 shared topics • 2 shared operations

Wm82-tools covers bioinformatics workflows for the Glycine max (soybean) Williams 82 (Wm82) reference genome — the primary reference for soybean genomics. Use cases: downloading and indexing Wm82 geno

2 shared topics • 2 shared operations