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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 20 |
| MUSCLE |
| Phylogenetics |
| Phylogenetics |
| 62.68 |
| +15% |
| 21 | SBayesR / SBayesRC | Population Genetics | Population Genetics | 62.68 | +15% |
| 22 | StringTie | Transcriptomics | Transcriptomics | 62.68 | +15% |
| 18 | SNPlocs.Hsapiens.dbSNP155.GRCh38 | Utilities & Infrastructure | Utilities & Infrastructure | 62.74 | +15% |
| 17 | PAINTOR | Population Genetics | Population Genetics | 62.8 | +15% |
| 16 | Cutadapt | QC & Preprocessing | QC & Preprocessing | 63.28 | +15% |
| 15 | Prokka | Genomics | Genomics | 63.4 | +15% |
| 13 | HISAT2 | Genomics | Genomics | 63.88 | +17% |