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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 1957 |
| Spark / PySpark |
| Workflows |
| Workflows |
| 21.84 |
| +3% |
| 712 | SparsePro | Population Genetics | Population Genetics | 35.74 | +8% |
| 584 | spatialdata | Imaging | Imaging | 35.8 | +8% |
| 713 | SpatialDE -- Spatially Variable Gene Detection | Single-Cell | Single-Cell | 35.74 | +8% |
| 1958 | SpatiaLite | Other | Other | 21.84 | +3% |
| 1959 | spatstat | Clinical Genomics | Clinical Genomics | 21.84 | +3% |
| 1465 | Spectra | Systems Biology | Systems Biology | 26.7 | +3% |
| 49 | Spectral | Other | Other | 46.84 | +10% |