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Spectral Python (SPy) routing skill for hyperspectral image data representation, manipulation, and processing. Use this skill when users mention SPy, spectralpython, hyperspectral imagery, ENVI header
Use with AI
Install the MCP server or CLI to instantly fetch Spectral documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/spectral
docker pull biocontainers/spectral:0.24Bio-Formats — Java library for reading and writing microscopy image formats. Supports 160+ file formats including OME-TIFF, CZI (Zeiss), LIF (Leica), ND2 (Nikon), VSI (Olympus), and proprietary vendor
1 shared topic • 1 shared operation
Cellpose — generalist deep learning algorithm for cellular and nuclear segmentation in microscopy images. Provides GPU-accelerated 2D and 3D instance segmentation using gradient flow representations,
1 shared topic • 1 shared operation
Orfeo ToolBox (OTB) is an open-source library for remote sensing image processing. It provides a wide range of state-of-the-art algorithms for high-resolution optical, multispectral, and radar images.
1 shared topic • 1 shared operation
QuPath — open-source platform for whole slide image analysis and digital pathology. Provides interactive tools for tissue detection via thresholding, cell detection and positive cell classification (H
1 shared topic • 1 shared operation
STARmap (Spatially-resolved Transcript Amplicon Readout mapping) — in situ spatial transcriptomics method that combines hydrogel-tissue chemistry with sequencing-by-hybridization (SEDAL) for multiplex
1 shared topic • 1 shared operation