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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 732 | Protégé | Systems Biology | Systems Biology | 35.5 | +8% |
| 686 | ProteinBERT | Proteomics | Proteomics | 35.74 | +8% |
Data as of: Apr 12, 2026
| 886 | ProteinMPNN | Structure Prediction | Structure Prediction | 29.4 | +3% |
| 1719 | ProteinShake | Machine Learning | Machine Learning | 24.3 | +3% |
| 565 | Proteome Discoverer | Proteomics | Proteomics | 35.8 | +8% |
| 141 | ProteoWizard msconvert | Proteomics | Proteomics | 38.92 | +8% |
| 1720 | ProtGPT2 | Proteomics | Proteomics | 24.3 | +3% |
| 2024 | protocols.io | Workflows | Workflows | 18.84 | +3% |
| 566 | ProtTrans | Proteomics | Proteomics | 35.8 | +8% |
| 1103 | ProtTrans | Proteomics | Proteomics | 26.76 | +3% |