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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 749 | FreeSurfer | Systems Biology | Systems Biology | 29.76 | +3% |
| 318 | FreeBayes -- Bayesian Haplotype-Based Variant Caller | Genomics | Genomics | 38.74 | +8% |
Data as of: Apr 12, 2026
| 980 | Franklin | Clinical Genomics | Clinical Genomics | 28.86 | +3% |
| 511 | FragPipe / MSFragger | Proteomics | Proteomics | 35.8 | +8% |
| 317 | FragGeneScan | Metagenomics | Metagenomics | 38.74 | +8% |
| 637 | fqtools | QC & Preprocessing | QC & Preprocessing | 35.74 | +8% |
| 1252 | Fpsim2 | Drug Discovery | Drug Discovery | 26.7 | +3% |
| 866 | FPocket | Structure Prediction | Structure Prediction | 29.4 | +3% |
| 1078 | FourCastNet | Machine Learning | Machine Learning | 26.88 | +3% |
| 1883 | formulaic | Utilities & Infrastructure | Utilities & Infrastructure | 21.84 | +3% |