FPocket — fast open-source protein pocket detection and druggability estimation using Voronoi tessellation and alpha spheres. Identifies binding sites on protein surfaces from PDB structures, scores p
Use with AI
Install the MCP server or CLI to instantly fetch FPocket documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/fpocket
CCP4 — Collaborative Computational Project Number 4 software suite for macromolecular X-ray crystallography. Provides programs for data processing (AIMLESS, POINTLESS), molecular replacement (Phaser),
1 shared topic • 3 shared operations
EvoDiff — discrete diffusion models for protein sequence generation directly from evolutionary-scale data. Generates novel protein sequences without requiring 3D structures using order-agnostic autore
1 shared topic • 3 shared operations
Use when working with OmegaFold to predict 3D protein structures from amino acid sequences without multiple sequence alignments (MSA-free). Covers single-sequence structure prediction, batch FASTA pro
1 shared topic • 3 shared operations
SAbDab (Structural Antibody Database) and ANARCI antibody numbering toolkit. Query the curated database of all antibody structures from the PDB with consistent Chothia, IMGT, Kabat, and Martin numberi
1 shared topic • 3 shared operations
Use when working with SMINA — a fork of AutoDock Vina with improved scoring functions and flexible docking for structure-based virtual screening and lead optimization. SMINA extends Vina with custom s
1 shared topic • 3 shared operations