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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 803 | pbsv | Genomics | Genomics | 29.7 | +3% |
| 802 | PBSIM3 | QC & Preprocessing | QC & Preprocessing | 29.7 | +3% |
Data as of: Apr 12, 2026
| 801 |
| pbccs (CCS) |
| Genomics |
| Genomics |
| 29.7 |
| +3% |
| 800 | OpenMS | Proteomics | Proteomics | 29.7 | +3% |
| 799 | MycoCLAP | Metagenomics | Metagenomics | 29.7 | +3% |
| 798 | miRDeep2 | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 797 | methylKit -- DNA Methylation Analysis in R | Genomics | Genomics | 29.7 | +3% |
| 796 | MethylDackel -- Methylation Extraction from BAM/CRAM Files | Genomics | Genomics | 29.7 | +3% |
| 795 | mapDamage2 | Genomics | Genomics | 29.7 | +3% |
| 794 | Manta | Genomics | Genomics | 29.7 | +3% |