pbsv

Conda and Mamba package/environment management for bioinformatics. Create, export, and reproduce isolated software environments using conda or mamba (fast C++ solver). Manage Bioconda channels, resolv

2 shared topics • 1 shared operation

Docker — container platform for building, running, and distributing reproducible bioinformatics environments. Provides Dockerfile authoring, image management, container execution with volume mounts fo

2 shared topics • 1 shared operation

LSHTM PathogenSeq bioinformatics pipelines for pathogen whole-genome sequencing analysis, including TB-Profiler for Mycobacterium tuberculosis lineage and drug-resistance prediction from WGS data, Mal

2 shared topics • 1 shared operation

Poetry is the Python dependency management and packaging tool for creating reproducible projects with pyproject.toml and poetry.lock. Use this skill for dependency resolution, virtual environment isol

2 shared topics • 1 shared operation

Seqera Platform (formerly Nextflow Tower) — cloud orchestration and monitoring platform for Nextflow pipelines. Provides the tw CLI for launching pipelines, managing compute environments (AWS Batch, G

2 shared topics • 1 shared operation