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Top bioinformatics tools ranked by usage across 2063 tools.
Data as of: Apr 12, 2026
| 1134 |
| Basset |
| Genomics |
| Genomics |
| 26.7 |
| +3% |
| 600 | batchelor | Single-Cell | Single-Cell | 35.74 | +8% |
| 601 | Battenberg | Clinical Genomics | Clinical Genomics | 35.74 | +8% |
| 1816 | BayesSpace | Single-Cell | Single-Cell | 22.68 | +3% |
| 1135 | baySeq | Transcriptomics | Transcriptomics | 26.7 | +3% |
| 144 | BBDuk | QC & Preprocessing | QC & Preprocessing | 38.86 | +8% |
| 303 | BBKNN -- Batch Balanced K Nearest Neighbours | Transcriptomics | Transcriptomics | 38.74 | +8% |
| 197 | BBMap / BBTools | Genomics | Genomics | 38.8 | +8% |