Basset — deep convolutional neural network for learning functional activity from genomic DNA sequences. Predicts chromatin accessibility (DNase-seq, ATAC-seq) across 164 cell types from 600 bp DNA win
Use with AI
Install the MCP server or CLI to instantly fetch Basset documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/basset
medaka -- neural network-based tool from Oxford Nanopore Technologies for creating consensus sequences and calling variants from nanopore sequencing data. Polishes draft assemblies from Flye, miniasm,
1 shared topic • 1 shared operation
MHCflurry — open-source Python package for MHC class I peptide binding affinity and antigen presentation prediction. Accepts peptide sequences (8-15 amino acids) and HLA allele names (e.g., HLA-A*02:0
1 shared topic • 1 shared operation
Open Targets Platform — large-scale target identification and prioritization resource integrating genetic, genomic, and disease evidence for drug target discovery. Provides REST API and Python client
1 shared topic • 1 shared operation
PharmGKB — Pharmacogenomics Knowledge Base for curated gene-drug relationships, clinical pharmacogenomics annotations, drug pathway diagrams, and VIP gene summaries. Query the PharmGKB REST API for va
1 shared topic • 1 shared operation
Remora is an Oxford Nanopore Technologies (ONT) tool for modified base calling from nanopore sequencing data. Trains neural network models to detect base modifications (5mC, 5hmC, m6A, pseudouridine,
1 shared topic • 1 shared operation