Battenberg

Canopy — Bayesian phylogenetic reconstruction of tumor subclonal architecture from somatic SNVs and copy number alterations (CNAs). Uses MCMC sampling to infer cancer evolutionary trees, estimate subc

3 shared topics • 1 shared operation

ipyrad is a Python toolkit for de novo and reference-guided assembly and genotyping of RADseq, GBS, ddRAD, 2bRAD, and other restriction enzyme-based reduced representation genomic datasets. Implements

3 shared topics • 1 shared operation

Snippy — rapid haploid variant calling pipeline for bacterial genomics. Maps paired-end or single-end reads to a reference genome using BWA-MEM and Minimap2, calls SNPs, MNPs, and indels via Freebayes

3 shared topics • 1 shared operation

Cenote-Taker 3 is a comprehensive bioinformatics pipeline for the discovery and annotation of diverse viral genomes (the virome) from metagenomic assemblies or individual sequences. It identifies vira

3 shared topics

PubMed Database — NCBI's comprehensive biomedical literature database providing free access to over 37 million citations from MEDLINE, life science journals, and online books. Query via E-utilities RE

2 shared topics • 1 shared operation