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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 19 | MetaPhlAn | Metagenomics | Metagenomics | 62.68 | +15% |
| 1547 | MetaPhlAn 4 / StrainPhlAn 4 | Phylogenetics | Phylogenetics | 25.38 | +3% |
Data as of: Apr 12, 2026
| 252 | metaSPAdes | Metagenomics | Metagenomics | 38.8 | +8% |
| 253 | MetaWRAP | Metagenomics | Metagenomics | 38.8 | +8% |
| 1802 | metaX | Systems Biology | Systems Biology | 23.7 | +3% |
| 936 | methylclock | Epigenomics | Epigenomics | 29.34 | +3% |
| 796 | MethylDackel -- Methylation Extraction from BAM/CRAM Files | Genomics | Genomics | 29.7 | +3% |
| 797 | methylKit -- DNA Methylation Analysis in R | Genomics | Genomics | 29.7 | +3% |
| 544 | methylpy | Epigenomics | Epigenomics | 35.8 | +8% |
| 1673 | MetPy | Other | Other | 24.3 | +3% |