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Top bioinformatics tools ranked by usage across 2063 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 1901 | lubridate | Utilities & Infrastructure | Utilities & Infrastructure | 21.84 | +3% |
| 240 | LUMPY | Genomics | Genomics | 38.8 | +8% |
Data as of: Apr 12, 2026
| 31 |
| M Cap |
| Population Genetics |
| Population Genetics |
| 49.72 |
| +8% |
| 241 | Maaslin2 | Metagenomics | Metagenomics | 38.8 | +8% |
| 841 | MACS2 (Model-based Analysis of ChIP-Seq) | Genomics | Genomics | 29.46 | +3% |
| 161 | MACS2/MACS3 | Epigenomics | Epigenomics | 38.86 | +8% |
| 57 | MAFFT | Phylogenetics | Phylogenetics | 45.88 | +8% |
| 1329 | Maftools | Clinical Genomics | Clinical Genomics | 26.7 | +3% |
| 327 | MAGeCK -- Model-based Analysis of Genome-wide CRISPR-Knockout | Genomics | Genomics | 38.74 | +8% |
| 242 | MAGeCK-VISPR | Systems Biology | Systems Biology | 38.8 | +8% |