M Cap

Ensembl VEP (Variant Effect Predictor) — annotates genomic variants with gene, transcript, protein, and regulatory consequences using Ensembl's annotation framework. Supports VCF, HGVS, and genomic co

2 shared topics • 1 shared operation

VEP (Ensembl Variant Effect Predictor) — gold-standard tool for annotating and predicting the functional effects of genomic variants on genes, transcripts, and protein sequences. Provides consequence

1 shared topic • 1 shared operation

Ensembl Database — EMBL-EBI's comprehensive genome annotation database covering 300+ species with gene models, variants, regulatory features, and comparative genomics. Query via REST API at rest.ensem

1 shared topic

TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti

1 shared topic

Zarr — chunked, compressed N-dimensional arrays for Python with cloud-native storage. Provides hierarchical groups, pluggable compression codecs (Blosc, Zstd, Gzip), sharding for large-scale datasets,

1 shared topic