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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 143 | MIRA --- Multimodal Models for Integrated Regulatory Analysis | Transcriptomics | Transcriptomics | 20.28 | +3% |
| 144 | atMPRA | Transcriptomics | Transcriptomics | 17.7 |
Data as of: Apr 12, 2026
| 36 | Pathfindr | Transcriptomics | Transcriptomics | 35.86 | +5% |
| 86 | R2DT | Transcriptomics | Transcriptomics | 27.3 | +5% |
| 7 | nebula | Transcriptomics | Transcriptomics | 47.68 | +8% |
| 8 | RSEM | Transcriptomics | Transcriptomics | 45.88 | +8% |
| 10 | Sqanti3 | Transcriptomics | Transcriptomics | 40.54 | +8% |
| 12 | FusionCatcher | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 13 | gffcompare | Transcriptomics | Transcriptomics | 38.86 | +8% |
| 14 | gffread | Transcriptomics | Transcriptomics | 38.86 | +8% |