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R2DT (RNA 2D Templates) — draws RNA secondary structures in consistent, publication-quality orientations using template-based layout. Given RNA sequences in FASTA format, R2DT searches 4,500+ Rfam cov
Use with AI
Install the MCP server or CLI to instantly fetch R2DT documentation:
Install command
claude mcp add biocontext7 -- npx @biocontext7/mcpOr share this page: biocontext7.com/tools/r2dt
docker pull biocontainers/r2dt:1.3.0bigWigMerge merges multiple bigWig signal tracks into a single bedGraph output by summing (or optionally taking the maximum of) per-base signal values. Essential for combining ChIP-seq, ATAC-seq, RNA-
2 shared topics • 1 shared operation
EnhancedVolcano — R/Bioconductor package for creating publication-ready volcano plots with enhanced colouring and labeling from differential expression results. Visualize DESeq2, limma, edgeR output w
2 shared topics • 1 shared operation
pygenometracks -- Python program and library for plotting publication-quality genome browser tracks. Generates highly customizable visualizations of bigwig, BED, GTF, bedgraph, Hi-C matrices, links/ar
2 shared topics • 1 shared operation
TCGAbiolinks for searching, downloading, and analyzing cancer genomics data from the NCI Genomic Data Commons (GDC). Routes tasks for GDCquery/GDCdownload, data preparation with GDCprepare, differenti
2 shared topics • 1 shared operation
WiggleTools — command-line toolkit for streaming arithmetic and set operations on genomic signal tracks stored in Wiggle, BigWig, BedGraph, and BAM/CRAM formats. Computes sums, means, products, log tr
2 shared topics • 1 shared operation