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Top bioinformatics tools ranked by usage across 144 tools.
| Rank | Tool | Usage | Trend | ||
|---|---|---|---|---|---|
| 84 | Ebseq | Transcriptomics | Transcriptomics | 28.86 | +3% |
| 83 | Benchmark Tools for Task | Transcriptomics | Transcriptomics | 28.86 |
Data as of: Apr 12, 2026
| 82 | Scanorama -- Efficient Integration of Single-Cell Transcriptomes | Transcriptomics | Transcriptomics | 29.4 | +3% |
| 81 | AUCell | Transcriptomics | Transcriptomics | 29.4 | +3% |
| 80 | Subread | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 79 | rMATS | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 78 | RiboCode | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 77 | miRDeep2 | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 76 | IsoQuant | Transcriptomics | Transcriptomics | 29.7 | +3% |
| 75 | HOMER (Hypergeometric Optimization of Motif EnRichment) | Transcriptomics | Transcriptomics | 29.7 | +3% |